Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs9295292 chr6:165365891 T/A 2.07E-5 527 17.28 41.53 39.7 KM Plot
KIRC rs9295298 chr6:165388453 A/G 4.12E-5 523 15.83 41.53 39.38 KM Plot
KIRC rs9328055 chr6:1445980 C/A 3.85E-6 512 40.58 39.53 10.97 KM Plot
KIRC rs9355517 chr6:165359947 G/A 2.07E-5 527 17.28 41.53 39.7 KM Plot
KIRC rs936427 chr3:48301074 A/G 2.7E-7 527 19.13 40.93 40.78 KM Plot
KIRC rs9365813 chr6:165339552 A/G 3.03E-5 523 15.83 41.53 39.62 KM Plot
KIRC rs9467626 chr6:25873746 C/A 2.91E-5 514 41.27 33.82 4.1 KM Plot
KIRC rs9467632 chr6:25889706 A/G 1.37E-9 514 41.27 36.95 2.38 KM Plot
KIRC rs9580618 chr13:23994128 G/T 1.22E-5 518 40.57 38.1 19.67 KM Plot
KIRC rs9610976 chr22:38949116 G/A 1.72E-5 519 39.2 41.35 10.37 KM Plot
KIRC rs9610977 chr22:38949376 G/A 1.83E-5 518 39.17 41.35 10.37 KM Plot
KIRC rs9652444 chr15:43543696 A/G 2.62E-5 508 39.7 41.73 10.97 KM Plot
KIRC rs9666963 chr11:69213299 T/C 0 519 0.6 43.03 39.17 KM Plot
KIRC rs9732194 chr10:126208460 G/A 4.88E-6 525 40 37.77 3.67 KM Plot
KIRC rs975229 chr4:16199117 A/G 4.95E-5 527 38.88 48.15 10.97 KM Plot